- AA Bere Tallo (Haliwen) Airport
- Alor Island - Mali Airport
- Bajawa Soa Airport
- David Constantijn Saudale Airport
- El Tari Airport
- Frans Sales Lega Airport
- Frans Xavier Seda Airport
- H. Hasan Aroeboesman (Ende) Airport
- John Becker Airport
- Kalabahi Airport
- Komodo Airport
- Larantuka Gewayentana Airport
- Lembata Wonopito Airport
- Mena Airport
- Naikliu Airport
- Pantar Kabir Airport
- Sabu-Tardanu Airport
- Tambolaka Airport
- Umbu Mehang Kunda Airport